PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55957.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 225aa    MW: 24771.8 Da    PI: 10.3889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55957.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.81.5e-34171421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtd el+ +yL++ + +++l++  vi+ v+   + +PwdLp +  +e ++ yfFs r+ +++ +g r++ra +sgyWkatgk+k+v+++
  MLOC_55957.2  17 LPPGFRFHPTDLELLLQYLRRMALDRPLPA-AVIPVVHAAALpDPWDLPGA--SEGESAYFFSLRQAASSgRGGRRRRA-ASGYWKATGKEKPVFVQ 109
                   79***************************9.899999766665******43..466889*****999887346666665.78**************9 PP

           NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+ lvg+k+ L+f++g++    +tdWvmheyrl
  MLOC_55957.2 110 lpvgKRLLVGVKTALAFHRGKS----RTDWVMHEYRL 142
                   99977778**********6544....79*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-4212170IPR003441NAC domain
PROSITE profilePS5100540.84217170IPR003441NAC domain
PfamPF023655.9E-2318142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGTRAAGEAP PATQQLLPPG FRFHPTDLEL LLQYLRRMAL DRPLPAAVIP VVHAAALPDP  60
WDLPGASEGE SAYFFSLRQA ASSGRGGRRR RAASGYWKAT GKEKPVFVQL PVGKRLLVGV  120
KTALAFHRGK SRTDWVMHEY RLAGAAEQNK RANDDSPQSS EWVVCRVSLK SRARRAAAGR  180
ETTADHHQQP SPSSTSSCVT DHACHAPDQE EVSSQQQQEQ QHPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D5e-30817011168NAC domain-containing protein 19
3swp_C5e-30817011168NAC domain-containing protein 19
3swp_B5e-30817011168NAC domain-containing protein 19
3swp_A5e-30817011168NAC domain-containing protein 19
3swm_D5e-30817011168NAC domain-containing protein 19
3swm_C5e-30817011168NAC domain-containing protein 19
3swm_B5e-30817011168NAC domain-containing protein 19
3swm_A5e-30817011168NAC domain-containing protein 19
4dul_B5e-3081708165NAC domain-containing protein 19
4dul_A5e-3081708165NAC domain-containing protein 19
1ut7_B5e-3081708165NO APICAL MERISTEM PROTEIN
1ut7_A5e-3081708165NO APICAL MERISTEM PROTEIN
1ut4_B5e-3081708165NO APICAL MERISTEM PROTEIN
1ut4_A5e-3081708165NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689130.0AK368913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576724.12e-79PREDICTED: NAC domain-containing protein 41-like
TrEMBLM0X0021e-165M0X002_HORVD; Uncharacterized protein
STRINGMLOC_55957.21e-164(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.23e-31NAC domain containing protein 41